Hello,
I am looking for an image dataset of large stained histology section (WSI). We aim at image registration and in particular, registration of large consecutive histological sections where for each slice different stain is used (such as Cc10, CD31, He, Ki67, proSPC, CNEU, ER, PR).
We have released our dataset for this task, but we feel it can be further enlarged. So we are looking for a reference to other similar data or someone interested in collaboration.
Thanks
Conference Paper Benchmarking of Image Registration Methods for Differently S...
http://cmp.felk.cvut.cz/~borovji3/?page=dataset
Thanks for pointing out this The Human Protein Atlas (https://www.proteinatlas.org/), I have not heard about it... but it seems to be something different, there are independent tissue samples with image size about 1900x900px which is not very large, and I have not found and "consecutive" section with different stains.
We have collected a multi-stain histology dataset of microscopy images:
- 49 image sets
- 5 institutions - CIMA, MMIP, AIDPATH, IBA, RWTH
- Average 5 images per set with min 3 and max 9
- 8 tissue kinds - Lung lesion, Lung lobes, Mammary glands, Mice kidney, COlon ADenocarcinoma, Gastric mucosa and gastric adenocarcinoma tissue, Human breast & kidney
- 18 different stains - CD1a, CD31, CD4, CD68, CD8, CNEU, Cc10, EBV, ER, HE, HER2, Ki67, MAS, PAS, PASM, PR, Pro-SPC, aSMA
- Original image sizes from 11k×6k up to 60k×75k pixels
- 5 resolutions - 0.174, 0.227, 0.468, 1.274, 2.294, 0.2528 [µm/pixel]
https://anhir.grand-challenge.org
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