Need some suggestions from who is working on CNV data?

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Amir Vajdi

Hi Nasataran,

Can you please provide more detail about the dataset that you're calling for CNV? Is that WGS, WES ULP, targeted, ... ?

What's the coverage of sequencing?

Are you interested in canonical or de novo CNV?

Do you have a matched normal sample as well?

You can follow this post which suggests different tools based on your settings.

https://www.biostars.org/p/299478/

Nastaran Maus Esfahani

Hi Amir Vajdi ,

It is a pulbic dataset, it contains CNVs of both healthy and patients subjects.

Below is the link to the web page that you can download the code and dataset. Just search for CKAT on the website to find it easily.

https://works.bepress.com/debashis_ghosh/