How to calculate the number of Na and Cl inos to be added to maintain 100mM NaCl concentration in the system, for molecular dynamics simulation study of a protein?
i was trying to take far UV spectra of a protein sample (buffer: 10 mM NaPi, 100mM NaCl, 2mM DTT). Till 210 nm there is no noise in the spectra but in the range 190 to 210nm there is lots of noice...
10 November 2018 1,488 12 View
I have seeded NIH-3T3 cells in T-25 flask. After 24 h, cells start to form clumps and continued to grow in the same manner.(Cells were grown in high glucose DMEM, 10%FBS, 1% antibiotic)
07 August 2018 4,680 4 View
hi, I am purifying the FHF2 protein by, Ni-NTA column chromatography followed by heparin column chromatography. After purification I have loaded the purified sample in SDS page gel, there is a...
31 December 2017 3,235 7 View
Does methylation of DNA affect the binding of ETBR?? Single stranded plasmid synthesis can be possible?
08 September 2014 5,926 5 View
Agarose gel electrophoresis, I have ran (2ul sample+1ul 6X gel loading dye+ 3 ul sterile water) plasmid (6kb) sample in 1 % agarose (Low EEO grade) gel with Zip Ruler Express DNA Kb ladder (...
08 September 2014 8,996 5 View
Hi, I know that low molecular weight (MW) molecules generally tend to have higher mobility, while high molecular weight molecules tend to have lower mobility. However, in my experimental...
06 August 2024 1,495 2 View
kindly reply me. Thanking you in advance.
05 August 2024 7,727 4 View
Is it possible to conduct a molecular dynamics simulation to see the effects of a specific carbohydrate on the structure of lipids (e.g., micelle structure)? I am a beginner in this field and plan...
03 August 2024 3,371 3 View
I am using a windows system, what software I should use for hydration shell analysis with molecular dynamics?
02 August 2024 3,143 4 View
Molecular docking software/ websites?
02 August 2024 8,704 7 View
Can we patent a process flow diagram developed using a process simulator but no actual cases is carried out? For example consider a process for certain product manufacture where a new process flow...
31 July 2024 781 1 View
Dear all, I am working on particle deposition in human's & rat's respiratory airways using CFD and I am looking for the 3D CAD file for my simulations (STEP or IGES format). If somone has such...
29 July 2024 1,092 2 View
Dear All Gromacs User I would like to restart MD without using checkpint .cpt files? I heard there is a way for acheiveing this. Any input and sugegstions are most welcome. Thanking You Budheswar
29 July 2024 3,084 8 View
Good day, I am a student trying to work on Autodock for a project regarding Ligand-DNA interaction so i am quite new to molecular docking. i have followed tutorials and did all the steps...
28 July 2024 2,136 4 View
If I want to calculate molecular dynamics (Gromacs), do I first need to optimize the geometry of the molecule? For example, I first draw the molecule in Avogadro, and then what? I guess I can't...
28 July 2024 673 3 View