Mixing Gaff And Amber force field ?

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I having problem in getting crystal. Can anyone please help me out with this?

Hello! I'm trying to get crystal of a compound which is having hydrogen bonding. thus, I'm trying to get crystals using polar aprotic solvents. Among those, the compound is completely soluble in...

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Could anyone please suggest me some fast publication Scopus/SCI/ UGC Care list journals for works related to digital image encryption?

Fast publication Scopus/SCI journals for digital image encryption-related works.

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How to refine and get the structure of a new material using powder xrd pattern?

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How to set a collective variable for metadynamics in CP2K ?

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Can I use palladium chloride instead of palladium acetate for buchwald hartwig amination?

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I'm not able to solve a problem in fullprof software. When I'm running the program, its showing "program interrupted" ?

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How to increase simulation box size?

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How to create parameter and coordinate files for ligand in amber when FATAL error (maybe due to duplicate bond specifications) happens?

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Not able to give GAFF forcefield to my ligand?

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Do you think can be any gas and oil reservoirs in central of Iran?

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How to apply virtual site for a polymer?

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Can I use different force field for protein and ligand?

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I found trouble to run MD of my peptide with PTM in different force field. In Charm-GUI, it cant recognize the engineering residue. What can I do now?

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How validate the dynamic molecualr simulation with experimental data?

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I tried to do simulation using YASARA software for an optimized ligand after docking but an error is coming what should I do?

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What is the actual distance covered during sit-to-stand test?

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Rezvan Marjani

Hi, reading this link will probably help you

http://ambermd.org/tutorials/basic/tutorial4b/

🌾

Nayhara B D F de Queiroz

Hi, check the Amber manual, chapter 15 talks about it.

http://ambermd.org/doc12/Amber20.pdf

The type of force field used will depend on the type of structure you are going to simulate.

Anwesh Pandey

I think you should read about Tleap/Xleap of amber.

That should answer your query.