Microscopic Darcy flux with the Macroscopic Darcy's law:

How exactly do we bridge the gap between these two different scales?

The Darcy flux (or the apparent velocity) pertains to the microscopic-scale scenario, while the Darcy's law pertains to the macroscopic scale.

The apparent velocity at the microscopic-scale can be converted into an equivalent actual velocity of fluid pertaining to the macroscopic-scale by dividing the apparent velocity with the effective porosity.

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