Hi all,

I'm looking for a way to quantitatively describe AT8+ aggregates in microscope slices i.e. distance from neuronal soma, radius, and number of AT8+ clusters. Ideally it'd be an automated program/macro which works on ImageJ's batch processing ware or works within 3D as I have a small server's worth of z stacks.

Anything at this stage is helpful, even links to tutorials for designing image-based neuronal measurement macros/programs.

Thanks in advance