MaxQuant 2.0.3.0 is not reporting iBAQ values?

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How to upload pdf of my articles published?

03 March 2021 2,183 3 View

Paired Samples t-test or repeated measure ANOVA?

Dear Research Gate members, for my masters's thesis, I have conducted a questionnaire to investigate consumer's attitude towards sport sponsorship. I've asked three identical questions...

27 January 2021 2,910 3 View

How to ensure diversity and fight stagnation in a complex two-objective optimization problem?

I am working on solving an optimization problem with two objectives by using neuroevolution. I use NEAT to evolve solutions which need to satisfy objective A and objective B. I tried different...

27 January 2021 4,875 3 View

What is the use of Carbon and Proton NMR Spectrum in Peptide Analysis?

Am in Peptide / Protein Research, may i know what useful analytical information we are getting from 13C & 1H NMR spectroscopy analysis? Somebody getting NMR for smaller proteins, any useful...

05 January 2021 1,196 7 View

Where can I find data on the total atmospheric absorption for a standard atmosphere?

Graphs like the one attached below can be found on every website explaining the spectral properties of the atmosphere. However, I wasn't able to find the data behind these graphs. I need the...

07 December 2020 2,851 4 View

Is there some kind of Octave package (or script) available, to interact with a PEAK CAN USB (or some other CAN hardware) device?

In MATLAB, you can use the Vehicle Network Toolbox, which supports CAN interfaces. I'm searching for something similar in Octave.

06 August 2020 9,571 2 View

In Porphyrin chemistry, what are the allowed limits of deviation (In percentage) from Elemental Analysis and Mass spec?

I synthesized some (metallo) porphyrins. I am now characterizing them by Mass spec and also confirming their purity by Elemental analysis. The values I got are a little deviated from the...

26 July 2020 2,886 2 View

Can you recommend any publications or authors on "The Impact of the IT&C Sector Upon a National Economy"?

Judging by most stock markets, "Big-tech" seems to be the success story, yet there are surprisingly few academic research papers written on this phenomenon. We are looking for studies and authors...

23 July 2020 5,074 3 View

About Fortran and defining the units?

Hi to all. I am doing a large set of calculations employing as input files called 1.log, 2.log, 3.log,......, 300.log. Usually I use this definition for the input file: OPEN(5,FILE='...

12 July 2020 5,027 12 View

Submission of dna sequences to NCBI?

When i submit dna sequences to NCBI, they ask for clarification saying "Some or all of the protein coding sequences contain internal stop codons, reading frame shifts (insertions/deletions...

03 July 2020 6,101 1 View

Anyone that can help with Maxquant TMT16plex which is missing?

Hi I am very new to proteomics analysis. I have got raw files from core facility running thermofisher TMT 16plex 4 hours. I cannot find on maxquant the option TMT16Plex there is only up to 11...

25 February 2021 1,675 3 View

Best statistical tests for proteomic data?

I have proteomic data of 33 samples (1,252 identified protein group). distributed into 24 case samples and 9 control samples. These 9 control samples were repeated measure to 9 samples from the 24...

11 November 2020 9,348 1 View

How do I assess when to use "match between runs" for LFQ analysis on Maxquant?

Hi Proteomics enthusiasts, I am currently analyzing DNA pulldown data (treated vs non-treated) using Label-free quantification on Maxquant. I am trying to assess if a protein is present in one...

04 August 2020 1,090 6 View

What is the best experimental design in Max Quant for 2 technical triplicates?

I am using MaxQuant to analyze some label-free experiment data. I did an affinity chromatography experiment and I have a technical triplicate of the elution and a technical triplicate of the...

14 May 2020 220 3 View

What is the equivalent of PSM value of Proteome Discoverer in Maxquant?

Hello, For further analysis of BioID results, I need PSM values but data is analysed by Maxquant and only have intensity values. I assume MS/MS count column in ProteinGroup is the PSM value but...

30 October 2019 5,886 2 View

MaxQuant Label free Data analysis - Is it right approach to first log2 transform LFQ intensity and then Normalised before taking a ratio?

I have a three biological replicates of treatment and Control samples. I am using MaxQuant for the data analysis . Currently, LFQ intensity has been log2 transform and then normalized....

30 October 2019 8,380 1 View

What is the solution to the error while running MaxQuant ?

Dear all, I use label-free QTOF technique (Bruker) in my project. I got a good result at the first time I analyzed .d folder using MaxQuant version 1.6.5. However, in the last 2 months, error...

18 August 2019 5,009 6 View

What is the solution to the error while running MaxQuant ?

Dear all, I use label-free QTOF technique (Bruker) in my project. I got a good result at the first time I analyzed .d folder using MaxQuant version 1.6.5. However, in the last 2 months, error...

07 August 2019 8,318 3 View

How can I analyze the data from LCMSMS- Sciex X500R QTOF System by MZmine2 or Maxquant?

We are trying to identify drug-modified peptides by LC-MS/MS. However, we failed to process the data from LCMSMS- Sciex X500R QTOF System by MZmine2 or Maxquant. Your experience will be helpful.

23 May 2019 8,775 3 View

How can I analyze the data from LCMSMS- Sciex X500R QTOF System by MZmine2 or Maxquant?

We are trying to identify drug-modified peptides by LC-MS/MS. However, we failed to process the data from LCMSMS- Sciex X500R QTOF System by MZmine2 or Maxquant. Your experience will be helpful.

04 May 2019 7,460 3 View