Mapping QTL using physical map?

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Jetty Ramadevi

I believe certainly you can use SSR markers for physical mapping and linkage map too apart from analysis of genetic diversity and individualization.

Siva Sivaramakrishnan

For mapping QTL any molecular marker is OK but the density of these markers matter a lot to locate the QTL

Yes that is true, everybody agrees, high density marker maps are reproducible and possible to determine the changes/structure of genomes. These techniques are widely used/exploited in plant and animal breeding.