I have a list of bacterial proteins that result from mass spectrometry and I want to classify them according to their function. Is there any software that can help with this?
You can go to a free site http://proteo.cnb.csic.es/pike/ and add your list of uniprot accession numbers saved as a .txt file. From there, in your results link (they will send to your email) there is the option for GO term graphs, one of which is function.