I want to dock a secretory protein having about 110 amino acid residues with more than thousand receptor proteins to find the best interaction. Is there any highthroughput technique available to do so?
There are no free software for protein-protien docking.... but u can rely on webservers for the same...
If you have access to Schrodinger softwares..... Piper protein-protein docking will do the job... Eventhough Im not sure about screening of different peptides to a particular target is possible at a time....