Recently I have done docking of certain ligand with protein but when I compiled all the results and submitted to a journal of bio molecular structure and dynamics So the first question raised about my work is to carried out the MD simulation of your docked complex....
Devashish Das
Dear Dr. Raza,
You can use NAMD. But it would be far better if you get Linux and can do it in Gromacs or Amber (Commercial).
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