I have purified a bacterial protein and I want to predict its possible interactors in plants. I have both accession no. and sequence of my purified protein.
Prediction can be done by using the caret package in R.
To read more about Caret package, you may like to check the URL attached.
R can read .CSV or .txt files, so you don't need a database here as your prediction problem is analytical and not interactive.
Good Luck
http://machinelearningmastery.com/caret-r-package-for-applied-predictive-modeling/
Thanks a lot Noha for the valuable information...i will check the attached link.
The following are the databases that would give relevant or related information on interaction partners based on the sequence info, protein name, host, disease, etc.
http://www.phi-base.org/
http://www.uniprot.org/
- Badges
- Science topic
- Similar topics
- Computer Science and Engineering
- Software