That is absurd to ask about ready made questionnaires. Questionnaires are always result of your research problem and design to collect and process information as per decided tools. Scholars wont need to ask such question once they follow step by step process of research projects. Literature survey is first step.

Design questionnaire as per your research questions and target audience or population universe

Here are links to two widely recognized organizational productivity questionnaires that you can explore:

Gallup Q12 Employee Engagement Questionnaire

This questionnaire measures employee engagement, which is directly linked to organizational productivity.

"Gallup Q12 Overview & Access"

The Job Demands-Resources (JD-R) Questionnaire

This scale assesses the balance between job demands and resources, and their effect on organizational productivity.

"ResearchGate - JD-R Model Scales"

Here is compilation of some points to assess productivity and some parameters to compare different organizations:

The list can be as long as one wants to be more and more deep probing.

Factors to Assess Organizational Productivity

Labor Productivity

Revenue per employee

Units produced per employee

Capital Productivity

Revenue per unit of capital employed

Return on investment (ROI)

Resource Utilization Efficiency

Rate of inventory turnover

Waste reduction ratios

Financial Performance

Net profit margin

Return on assets (ROA)

Operational Efficiency

Cycle time for production

Order fulfillment time

Employee Engagement and Satisfaction

Employee satisfaction scores

Employee retention rates

Innovation and Technology Integration

R&D investment levels

Number of new products introduced

Quality of Goods and Services

Defect rates

Customer complaints

Time Management and Scheduling

Lead time in processes

Average project completion time

Market Share and Competitive Position

Market share percentage

Competitive benchmarking

Comparing Relative Organizational Productivities

Benchmarking

Comparing industry competitors' performance metrics

Identifying best practices for operational improvements

Ratio Analysis

Comparing revenue per worker ratios

Analyzing production per capital employed

SWOT Analysis (Strengths, Weaknesses, Opportunities, Threats)

Identifying competitive advantages

Analyzing organizational weaknesses impacting productivity

Cost-Benefit Analysis (CBA)

Comparing costs with operational outputs

Assessing efficiency of strategic investments

Comparative Financial Analysis

Comparing net profit margins between organizations

Analyzing Return on Equity (ROE) between firms

Rajendra K. Gupta thanks for your benefit help.