I'm looking to take an Arabidopsis RNA-Seq differentially expressed gene set and search it against other publicly available RNA-Seq (and possibly microarray) experiments to find the experiments that found the most similar patterns of deferentially expressed genes.
Does anyone know if a tool that enables this has already been created?
The closest thing I can think of to what you want to do is this (https://academic.oup.com/nar/article/46/9/e54/4920847).
You can check out following two resources for gene expression analysis:
http://travadb.org/browse/
http://bar.utoronto.ca/efp2/Arabidopsis/Arabidopsis_eFPBrowser2.html
Another option is, you can browse datasets of Arabidopsis on GEO (https://www.ncbi.nlm.nih.gov/geo/). It host most publicly available datasets. It predominantly stores raw files from different transcriptome experiments. Once you have listed down GEO IDs of your interest, you can yourself analyze these datasets with click of button using portal GEO2R (https://www.ncbi.nlm.nih.gov/geo/geo2r/). It hardly takes minute and you can store result of each analysis you do. You need not have computational background to execute this program. Its as simple as plug n play.
I hope it helps !!
All the best.
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