AutoDockTools has an option for specifying the number of torsions of a ligand that is being prepared for docking using programs such as AutoDock or AutoDock Vina. This process is explained in the tutorial for AutoDockTools.

http://autodock.scripps.edu/faqs-help/tutorial/using-autodock-4-with-autodocktools/2012_ADTtut.pdf

I want to apply the same function using a script so that it can be applied to many ligands at the click of a button. Does anyone know of such a script? I am familiar with the prepare_ligand4.py script, but to my knowledge it doesn't do what I'm looking for.

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