software like MAPMAKER for genetic linkage map and the type of data need for analysis
Yes! There are so many software for constructing maps like WinQTL cart, JoinMap and Tassel etc.
Dear Dr Anuj Kumar,
Could you help me in how JoinMap and Tassel analysis the data. Which file format need for analysis.
with best regards
Khaled
One alternative is r/qtl (http://www.rqtl.org/). If you are familiar with R, it can be installed with the command install.packages("qtl") in R. You can have the input data in csv format (http://www.rqtl.org/sampledata/). There is a tutorial available for genetic map construction. (http://www.rqtl.org/tutorials/geneticmaps.pdf)
Dear all,
One good option for linkage map construction is my software Lep-MAP2 (https://sourceforge.net/projects/lepmap2/).
Cheers,
Pasi
Hi Pasi,
May i know whether you have prepared any tutorial for Lep-MAP2?
Dear Ai,
Currently there is no tutorial available, but the wiki contains examples how to use LM.
Cheers,
Pasi
I would definitely recommend MultiPoint software, which includes three sub-packages: MultiPoint-basic, MultiPoint-ultradense, and MultiPoint-consensus.
Dear all,
Just updating here that Lep-MAP2 is no longer supported as my new software Lep-MAP3 (https://sourceforge.net/projects/lep-map3/) is superior to it in all aspects.
Cheers,
Pasi
- Badges
- Science topic
- Similar topics
- Geoscience
- Asia
- India