It is depending on prodrug property. Usually, the transdermal route is chosen for avoiding 1-st pass metabolism of drug in the liver. If that prodrug has extreme problem from oral route and has suitable property for transdermal delivery, it may be good idea to deliver this prodrug via transdermal route.
I am planning to prepare a transdermal delivery of an anticancer prodrug for the breast cancer. The hypothesis is that the TD system will be applied on the breast skin and the drug will get permeated through the skin and will have effect on the brease tumor.
You should think of the metabolizing enzymes in the skin and the possibility that your prodrug can be broken to the active moiety and give action at the target site.