Hi

I have a system made of two large molecules. After optimization, I found that the two molecules are aligned side-to-side in a way that shows strong intermolecular attractions such as H-bonding. I can see that from the distances.

How would I map or visualize such intermolecular attractions. I am using Amsterdam Modeling Suit, the BAND engine?

Ismail Badran

An-Najah National University

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