As a founder of silicoflask.com and as a scientist I wondering in what kind of molecular systems (or topic) you are interested in?
The SilicoFlask.com is a platform for molecular systems cloud computing. We use the Scheutjens-Fleer Self Consistent Field (SF-SCF) method to predict or confirm experimentally determined behaviour of the molecules. Our aim is to provide super-fast computer approach with a coarse-grained detailing level to help the scientists and pharmacy industry get the solid answer on their questions as soon as possible.
We recently added the list of topics we can deal with and it will be good if you may find them useful.
You can find the above mentioned list here: https://silicoflask.com/about
I will be very thankful if you can write below your favorite system from the list. The results will be taking into account for future tutorials.
Thank you for your time.
Wish you a very good day!
-Boris.
https://web.stanford.edu/class/sbio228/public/readings/Molecular_Simulation_I_Lecture4/Levinthal_SCIAM_66_Protein_folding.pdf
Thank you for the answer! You can study both, the conformation and persistence length.
For the conformation, for example, of the linear molecule, you can select 1 gradient spherical system and pin the middle segment of the molecule to the center and ask for the density profile. So you can see the molecule volume fraction as a function of a distance from the molucule center.
To study the persistence length you have to select the 2g cylindrical system and set the offset. Then the offset value will effectively change the curvature and you may find the persistence length.
If you want to try, please register and let me know by email [email protected]. I’ll do my best to help you!
Hello Boris Okrugin,
My name is Darrell Robinson and I am a Biomedical Engineering PhD student studying and conducting research in Systems Biology and Bioinformatics regarding Gene Expression of the Immune System.
I was contacted by an associate of yours named Veronica Bazunova, the Product Lead, regarding your software web platform called Silico Flask. She was looking for beta testers and gave me some information about it such as how to register.
I am very interested in beta testing the software and learning more about it, but when I tried to register or go to the home website the link did not work. If the project and/or the testing is still on-going and you are looking for some more people to test the software, please feel free to let me know by either email or by phone. I would be more than happy to get involved further.
If I contacted you in error, please let me know and I apologize in advance. Thank you and I look forward to hearing from you.
Best Regards,
Darrell Robinson
Binghamton University SUNY
Department of Biomedical Engineering
Systems Biology & Bioinformatics
PhD Student
Phone: 512-960-9838
Email 1: [email protected]
Email 2: [email protected]
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