Dear researchers
Please help me !!!. How to detect the candidate gene according to the GWAS marker? Thanks
Read the following article in BMC genomics
https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-019-6324-7
Good Luck
Thanks very much. I can do it now...
You could use the VEP tool (ensembl web site) to get the position within (or outside) the genes, and the GTEX portal to check whether the SNP is an eQTL and to identify its potential target genes.
Thanks very much
I would like to linearize my nonlinear MIMO system (I use this model for reference tracking purposes), but it doesn't fulfill the requirement of feedback linearization. Are there any alternative...
25 November 2020 4,637 3 View
I tried to mix polyurethane and graphene oxide with ionic liquid (EMIM-TFSI) to enhance it's ionic conductivity, will there be any effect in functional group charge (negative -cooh, -oh) of GO or...
27 May 2020 7,333 4 View
I hope to track my liposome nanoparticles both in vitro and in vivo. I also intend to quantify each excipient ratio from the corresponding labeling (if possible). Does anyone familiar or have some...
28 January 2020 6,822 4 View
How to implement a malicious node over OLSR and GRP in MANET to perform black hole attack using OPNET simulator?
30 May 2017 5,758 3 View
18 October 2016 5,386 13 View
Dear Experts, I found this eggs on citrus leaf in West Java, Indonesia. They have stunning painting and looks so artistic. Is there anyone knows, what kind of insect that have this eggs? Many...
22 August 2016 2,020 9 View
I'm having difficulties finding a suitable identification book for terrestrial gastropod (especially slug) in Indonesia. I'm trying to ID my specimens using idtools.org but i cant find any species...
24 April 2015 643 3 View
Differential varieties, both resistant check and susceptible check, are required in conducting a screening for plant pest resistance, such as Geminivirus. I am conducting an experiment of...
16 April 2013 790 15 View
Is the Android application to find out seagrass cover accurate and recommended for research purposes ?
01 January 1970 9,717 3 View
are Amoxicillin and Ampicillin will be denatured when it autoclaved in agar nutrients?
01 January 1970 9,311 9 View
I am trying to perform a genome-wide association on mitogenome variants (obtained from GATK-Mutect2) vs. phenotypes by using GAPIT. The number of individuals is seven and GAPIT function does not...
14 December 2020 8,853 3 View
Hi,I am doing GWAS analysis on both quantitative and qualitative trait through GAPIT 3.0. Code run well for Quantitative traits but shows following error in qualitative trait Error in...
18 July 2020 9,541 5 View
I am investigating on SNP-trait association in a species with a narrow genetic base. I have phenotyped and genotyped 80 accessions. I would like to use GWAS for the association analysis. From...
04 July 2020 850 9 View
Hi, I have two data sets from the illumina omniexpress snp array platform. The first data set was mapped using the GRCh37 build and the second one was more recently read using the GRCh38 build....
14 June 2020 6,281 1 View
I need to perform a meta-analysis of 2 GWAS studies and I need assistance with the input study files (plink --assoc.logistic) as well as the output meta-analysis file (.TBL). - Firstly, I am not...
07 June 2020 5,831 1 View
Hello All, Greetings, I have 2 cohort datasets with 500 sample size each and 200 SNPS of genotype files as (example1.gen and example2.gen) as input files and trying to generate other formats...
31 May 2020 2,795 1 View
Hi, I am doing a GWAS analysis of european bison's a dog's SNPs. Right now I am doing multiple data clean up, according to previous studies and what I have learned. I was thinking, if it is ok to...
18 March 2020 3,103 3 View
Can anyone suggest a reason why the association between my SNPs (90 thousand) and two quantitative traits (BMI and age) has a FDR-adjusted P-value over 0.9 for all my SNPs? I think it is very...
18 March 2020 8,080 3 View
Hello everybody, I am new with the meta-analysis in Genome Wide Data so I have this doubt. I have read METAL documentation, which is by far the most used meta-analysis software in both EWAS and...
12 February 2020 2,922 3 View
01 February 2020 1,977 2 View