My file contains 1 protein and 2 ligand that i have docked simultaneously but ligplot+ is showing only 1
If your complex molecule has multiple ligands, Yes you can able to select the ligand in the view option.
Please refer to section 3 in the below link.
https://www.ebi.ac.uk/thornton-srv/software/LigPlus/manual/manual.html
Thank you for your help but what if file consider 2 ligand as 1 so is there any way to separate them
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