I have a list of proteins and there Sequences in my MS/MS data , now i want to verify the Glycoproteins from this list, any tools recommendation?

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Michitoshi Watanabe

Nikunj Tyagi , If you have the protein names, how about to search at UniProt https://www.uniprot.org, UniProtKB?

You will be able to find modification sites in your proteins. Is not this answer you want?

Nikunj Tyagi

But list of proteins is huge! How to search in one go? At all proteins