Hi researchers,
I have used Amber16 to run a molecular dynamics simulation of my protein system for 50 ns. After the production run was completed, I have generated an MD trajectory with 2500 snapshots which I further analysed using the Cpptraj program. The issue is, after doing a few analyses using cpptraj, the results were generated in the .DAT extension which I can only open in Excel. I analysed the dynamic cross-correlation of all atoms (DCCM), hydrogen bond analysis, Radius of gyration and all the results were generated in the .DAT extension (file format). Therefore, can anyone suggest to me how to change the result file format or what are the software, can be used to view the results generated by AMBER 16? If there is an option in AMBER to visualise this file format, then kindly do let me know as it will help me to progress my research.
Thanks, regards
~Priya
Hi. You can use Gnuplot, MATLAB, Xmgrace etc. for plotting .dat files.
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