I am searching miRmap score for some miRNAs having binding site in 3'UTR of CFTR. I am little bit confused.
Example:
When I am putting just the name of a miRNA in miRmap application and the gene name i.e. CFTR. It is showing a miRmap score which is different when I am putting the sequence (taken from miRBase) of same miRNA in miRmap. For example hsa-miR-145-5p is showing 0.593497602 as miRmap score manually (if putting sequence i.e. GUCCAGUUUUCCCAGGAAUCCCU) but if we search just with the name i.e. hsa-miR-145-5p the miRmap score will be 84.4904.