How to tune a KEGG pathway in Cytoscape using CyKEGGParser?

Lakshmi Krishnakumaar @Lakshmi_Krishnakumaar2

12 December 2017 1 5K Report

I have a pathway in KEGG which I need to view in a completely connected. I have loaded the file in Cytoscape -> KEGGParser. I am able to tune in a circular connected fasion but the node entries are changing into SUID(Cytoscape IDs).

How to get the node names and the interactions list from the data.

Thanks in advance for all the suggestions

Yanshi Hu

Hi Lakshmi,

I haven't used the Cytoscape plugin CyKEGGParser ever, but you might find something useful by reading the tool tutorial (http://big.sci.am/apps/cy_kp/CyKEGGParser_User_Manual.pdf).

Best,

Yanshi

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