Parsing BLAST Results...
Rendering CGVIEW image...
java -Xmx1500m -jar cgview\cgview.jar -f jpg -i D:\myroides\OUTPUT\scratch\Galaxy37-[ivar_consensus_on_data_32_Consensus].fasta.xml -o D:\myroides\OUTPUT\Galaxy37-[ivar_consensus_on_data_32_Consensus].fasta.jpg
Parsing XML input.
SYS_ERROR:org.xml.sax.SAXException: value for 'sequenceLength' attribute in cgview element must be less than 20000000 in null at line 1 column 1063
SYS_ERROR: at ca.ualberta.stothard.cgview.CgviewFactory.handleCgview(CgviewFactory.java:593)
SYS_ERROR: at ca.ualberta.stothard.cgview.CgviewFactory.startElement(CgviewFactory.java:510)
SYS_ERROR: at org.apache.xerces.parsers.AbstractSAXParser.startElement(Unknown Source)
SYS_ERROR: at org.apache.xerces.impl.XMLNSDocumentScannerImpl.scanStartElement(Unknown Source)
SYS_ERROR: at org.apache.xerces.impl.XMLNSDocumentScannerImpl$NSContentDispatcher.scanRootElementHook(Unknown Source)
SYS_ERROR: at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl$FragmentContentDispatcher.dispatch(Unknown Source)
SYS_ERROR: at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source)
SYS_ERROR: at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source)
SYS_ERROR: at org.apache.xerces.parsers.DTDConfiguration.parse(Unknown Source)
SYS_ERROR: at org.apache.xerces.parsers.XMLParser.parse(Unknown Source)
SYS_ERROR: at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown Source)
SYS_ERROR: at ca.ualberta.stothard.cgview.CgviewFactory.createCgviewFromFile(CgviewFactory.java:300)
SYS_ERROR: at ca.ualberta.stothard.cgview.CgviewIO.main(CgviewIO.java:1056)
SYS_ERROR:The following error occurred: org.xml.sax.SAXException: value for 'sequenceLength' attribute in cgview element must be less than 20000000 in null at line 1 column 1063
Done.
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