Hello everyone,
I have RAD-seq data with about 2,000 SNP, and I am looking for methods to reconstruct "dated" phylogenetic trees with concatenated SNP
I have noticed SNAPP could be used to reconstruct trees with divergence times, but this methods also need fossils or geographic events for calibration
However, I have no fossil to perform calibration, I think I could use the approach such as strict clock model to reconstruct my tree
Is it an excellent way to perform a strict clock model with concatenated SNP (all polymorphic sites) for dating a phylogenetic tree (e.g., using Beast)?
Thanks for any suggestion