24 September 2022 0 7K Report

Hello everyone,

I have RAD-seq data with about 2,000 SNP, and I am looking for methods to reconstruct "dated" phylogenetic trees with concatenated SNP

I have noticed SNAPP could be used to reconstruct trees with divergence times, but this methods also need fossils or geographic events for calibration

However, I have no fossil to perform calibration, I think I could use the approach such as strict clock model to reconstruct my tree

Is it an excellent way to perform a strict clock model with concatenated SNP (all polymorphic sites) for dating a phylogenetic tree (e.g., using Beast)?

Thanks for any suggestion

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