hi i want to make a chimeric protein model using four switch conformations from template2/proteinB while model the rest of protein from template1/proteinA (as described in example below). can you recommend me which set of commands to be used in modeller website. if you can write me specific scripts for this purpose i will be much thankful.
proteinA aaaaaaaa--------cccccccc-----eeeee-------gggggg------- template1 proteinB --------bbbbbbbb--------ddddd-----fffffff------hhhhhhh template2 chimera aaaaaaaabbbbbbbbccccccccdddddeeeeefffffffgggggghhhhhhh query