How to map differentially expressed genes identified using Affymatrix microarray plateform in rice using mapman?

Hifzur Rahman @Hifzur-Rahman-3

09 March 2016 1 10K Report

I have list of drought responsive DEGs of rice identified through Affymatrix chip.

Want to map against metabolic pathways using Mapman.

Can anyone please guide me?

Arvind H Hirani

In rice reference genome is well characterized,

You may use following approaches

1) Find loci probe seq based on DEGs from affimatrix chip

2) Blast search hits with high match can be seach on KEG pathway

3) Also may try GO term search of blast hits

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