How to install G_MMPBSA in Windows 7, 64 bit ?

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What are the steps to calculate bond dissociation enthalpy in gaussian?

For example, in phenol, how to calculate the bond dissociation enthalpy of each bond using gaussian? What are steps?

08 September 2019 5,174 3 View

Why the theoretical values (vibrational and NMR ) obtained through Gaussian is greater than experimental values?

Why the theoretical values (vibrational and NMR ) obtained through Gaussian is higher than experimental values? NMR was computed using GIAO technique and vibrations were calculated using B3LYP...

05 June 2019 8,671 5 View

What are the books/papers to learn about quantum confinement in 1D, 2D and 0D nanostructures?

What are the books/papers to learn about quantum confinement in 1D, 2D and 0D nanostructures? What are books/papers to know more about nanoelectronic devices?

31 December 2018 1,540 8 View

How to proceed with molecular dynamic simulations in nanoscale?

How to commence simulations in nanoscale? In which part of the code do we introduce the nano dimensions?

11 December 2018 6,285 7 View

How to calculate thermal and electrical conductivity of an organic compound using Molecular dynamic simulations?

10 November 2018 842 4 View

How to view the conformational change in the protein after MD simulations of protein ligand complex?

How to view the conformation change in protein after 50 ns MD simulations?

01 February 2018 9,503 3 View

In gaussian calculation, what does negative polarizability of an isolated molecule indicate?

In Non-linear optical activity what does negative polarizability of an isolated molecule indicate (through gaussian calculation)?

10 November 2017 5,004 1 View

How to make a Journal indexed in Scopus?

We have multidisciplinary Journal in the college (St. Joseph's Journal of Humanities and science). We publish Research articles in all the disciplines. Till now we have published 8 issues as four...

09 October 2017 3,422 5 View

What is meant by pi-alkyl, pi-pi T shaped and pi-Sulphur interaction in protein-ligand binding?

Can anyone suggest books/papers which clearly explains pi-alkyl, pi-pi T shaped and pi-Sulphur interaction?

09 October 2017 2,583 4 View

How to fix the following mpirun error?

I do MD simulations in SGE cluster using gromacs 5.0.2 version. After exporting the path and libraries correctly, I gave the following commands gmx grompp -f mdp/eql2.mdp -o eql2 -pp eql2 -po...

08 September 2017 9,522 3 View

Gromacs first step of minimization ?

I have face this problem anyone help me how to solve this issue ?which is below Fatal error: There are inconsistent shifts over periodic boundaries in a molecule type consisting of 78 atoms. The...

07 August 2024 2,598 1 View

Are there instances where molecules with larger molecular weights exhibit greater mobility than those with smaller molecular weights?

Hi, I know that low molecular weight (MW) molecules generally tend to have higher mobility, while high molecular weight molecules tend to have lower mobility. However, in my experimental...

06 August 2024 1,495 2 View

For an in-vitro drug release study, what molecular weight cut-off (MWCO) dialysis bag is required for a 117 kDa protein?

kindly reply me. Thanking you in advance.

05 August 2024 7,727 4 View

How to start a Molecular Dynamics Simulation?

Is it possible to conduct a molecular dynamics simulation to see the effects of a specific carbohydrate on the structure of lipids (e.g., micelle structure)? I am a beginner in this field and plan...

03 August 2024 3,371 3 View

Which will be the best software for the Hydration shell analysis with molecular dynamics?

I am using a windows system, what software I should use for hydration shell analysis with molecular dynamics?

02 August 2024 3,143 4 View

Can anyone provide me with molecular docking softwares/ websites?

Molecular docking software/ websites?

02 August 2024 8,704 7 View

Can we patent a process flow diagram developed using a process simulator but no actual cases is carried out?

Can we patent a process flow diagram developed using a process simulator but no actual cases is carried out? For example consider a process for certain product manufacture where a new process flow...

31 July 2024 781 1 View

CAD File of human's & rat's respiratory airways ?

Dear all, I am working on particle deposition in human's & rat's respiratory airways using CFD and I am looking for the 3D CAD file for my simulations (STEP or IGES format). If somone has such...

29 July 2024 1,092 2 View

How to restart MD without using checkpint file in GROMACS?

Dear All Gromacs User I would like to restart MD without using checkpint .cpt files? I heard there is a way for acheiveing this. Any input and sugegstions are most welcome. Thanking You Budheswar

29 July 2024 3,084 8 View

AutoGrid and Autodock 4.2.6 window opens for 1 second then closes and there is no output files?

Good day, I am a student trying to work on Autodock for a project regarding Ligand-DNA interaction so i am quite new to molecular docking. i have followed tutorials and did all the steps...

28 July 2024 2,136 4 View

Mohammad Tarek

Alternatively, we could install a virtual machine like vm ware and then install an open source linux version, after that we can install and work on whatever linux based applications [which are crucial in bioinformatics field] without any limitations on the same windows system

Fotis Baltoumas

The answer is simpler than you think. Download the source code packages - not the precompiled binaries - and follow the same procedure that you would follow to compile them in linux.

Note that in order to do that you need a Cygwin installation that includes gcc/g++, gfortran, python, make and cmake. If you don't have those, re-run the cygwin setup to download these packages and update your installation.