Fotis Baltoumas

4 Questions 29 Answers 0 Followers

Questions related from Fotis Baltoumas

Is there a tool to model post translational modifications on a protein structure or model?

A number of post translational modifications can occur to a protein, including phosphorylation, methylation etc. I am aware that there are a number of servers and tools to predict positions for...

03 March 2014 8,737 4 View

Should Computational Alanine Scanning results be taken as absolute values?

I have been running some computational ALA scanning trials on protein-protein complex structures using the FoldX package. In many of my results, a number of residues had negative values of...

01 January 2014 5,272 1 View

Is the DSSP H-bond energy term suitable for side-chain hydrogen bonds?

I am currently trying out and comparing different hydrogen bond calculation approaches. The coulomb energy equation of the DSSP algorithm calculates the energy of hydrogen bonds between NH and CO...

12 December 2013 8,597 0 View

Is there a method to estimate hydrogen bond energy in protein-protein interactions?

I am currently trying to calculate intermolecular energies in crystal structures of protein-protein complexes. What are the available options (some software, or at least a method/equation I could...

11 November 2013 5,689 11 View