I'm working in the validation of a 15 question long, Likert scale based questionnaire. The general steps I have followed are more or less described here: https://www.methodspace.com/validating-a-questionnaire/.

A subset of the questions (4 of them) can only be answered if the respondent either smokes or drinks alcoholic beverages. After noticing this overlook in the first day of pilot testing, we modified the instrument accordingly to consider that branch, but now we don't know how to handle the skipped questions, since this isn't random missing data. The first possibility that I envision is running the statistics and analysis for the general questions, and validate those 4 questions separately. After that, merge the results. Even if I validate each subset of questions individually, I don't know if it's methodologically correct to just merge them in a single questionnaire later.

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