Hi All,
I am staring into imputation of variants for the genome wide scanning array in past weeks. Though I am able to do imputation using 1000GP3 panel using Impute2 for my dataset, I would like to use a much better imputation reference panel. Based on my readings, I am able to understand that the Michigan Imputation server was currently used by many researchers worldwide and has more citations than others. I am getting reference panel options for impute such as 1000G, HRC, GaSP pilot, CAAPA and HapMap only. How to get TOPMED reference panel and how to use some region specific reference panels. Suggestions will really help me a lot.
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