How to generate LD decay plots from Tassel output?

More Gurkamal Kaur's questions See All

How to calculate the LD decay distance from TASSEL output?

I have generated the LD from 31000 markers in TASSEL which resulted in around 13 lakh comparisons. I was trying to generate the LD decay plot by LOESS method and want to calculate the distance of...

10 August 2021 9,304 0 View

What is the depositional environment of the alluvial fan and difference between alluvial plain and loess plain?

13 July 2024 8,178 2 View

How Tasseled cap (TC) can be estimated using ArcGIS Pro? Any youtube video, tutorial, helpbook) please recommend?

Using ArcGIS

12 June 2024 7,054 2 View

What is the best soil depth for sampling to estimate carbon sequestration? What is your suggestion?

Sampling of rangeland and agricultural lands will be done in loess deposits.

25 March 2024 9,858 3 View

I want to perform a GWAS on the octoploid Fragaria x ananassa, does anyone know which (software) tool is able to do this?

The genotyping data we have comes from a GBS analysis, I added screenshot from our data as example. We also have our GBS data available in a VCF file. The phenotypical is scoring data from a Bio...

17 October 2023 8,974 0 View

Hi,does seasonal trend decomposition using LOESS remove both trend and seasonality from a time series?

STL Decomposition

07 May 2023 6,199 3 View

Platforms for sequence processing?

Which free platforms are available other than TASSEL to process DNA raw GBS sequence data (Quality check of raw sequence, barcode splitting, pre-processing, alignment to reference genome and SNP...

06 March 2023 3,503 0 View

Locally Weighted Linear Regression (Loess) in MATLAB or Python?

I am searching for the function of LOESS in MATLAB to verify the one that I have written myself. I appreciate it if you share it with me.

22 January 2023 5,442 8 View

Where can I get the ArcGIS's Tasseled Cap Analysis tool for Landsat 5, 7 ,8?

I'm looking to extract shorelines from satellite images. To find a suitable method I need to compare various methods of automatic shoreline extraction methodologies. If you have any suggestions...

15 October 2022 2,177 1 View

Associate single phenotype factor (non-numeric) to SNPs in Tassel?

How would one associate a single phenotype factor (binary presence / absence of trait) to SNPs in Tassel (v5.2.58) GUI? I generated VCF file using GATK and am able to import the VCF and...

07 April 2022 5,907 3 View

I'm looking for published papers on loess grasslands of South America. Could you suggest some?

Dear Colleagues, I'm looking for published papers on loess grasslands of South America. Especially papers describing native, species-rich, high-diversity grasslands on loess soil regions are in...

04 March 2022 5,494 4 View