How to extract sequences for different isoforms of a gene from RNAseq?

07 July 2015 0 7K Report

I have finished pair-end RNAseq analysis using Tuxedo Protocol. Now I need to extract sequences of different isoforms of a gene from my samples (a total of 6).

How should I proceed?.

I have *.bam, *.gtf files in hand..

something java-based on web-based would be great. I dont have full command over command-prompt/python etc.

Cheers

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