I want to do Steered Molecular Dynamics with umbrella sampling. Can anyone help me with examples or scripts ?
For namd program you should look at the online tutorials following this link
http://www.ks.uiuc.edu/Training/Tutorials/namd-index.html
For charmm program there is an online documentation with many explanation and examples following this link
www.charmm.org
Afm module for steered md, and adumb for umbrella sampling.
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