do the primers differ according to bacterial species ? or they are the same for all bacteria?
Read this article maby help you:Methods Mol Biol. 2009;551:49-58. doi: 10.1007/978-1-60327-999-4_5.
Use of repetitive element palindromic PCR (rep-PCR) for the epidemiologic discrimination of foodborne pathogens.
Here is a link for an old, but very useful article:
https://www.researchgate.net/profile/Sabeen_Raza/publication/8096247_Microbial_DNA_typing_by_automated_repetitive-sequence-based_PCR_J_Clin_Microbiol/links/0fcfd4fdb58321f749000000.pdf
Have a look at Table 1; it summarizes almost all primers usually used for this purpose.
Good luck brother!
Article Microbial DNA Typing by Automated Repetitive-Sequence-Based PCR
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