I have 74 proteins which have been changed after cell treatment.
I would like illustrate a network, based on this genes. I wanted to use cytoscape (v 3.7.1). but I do not know how and in which format to load these 74 proteins in cytoscape to get network connection. I have tried string for them and found some connection. I donot know how to do that in cytoscape. please can someone give me detailed step by step to follow.
Hi,
Cytoscape takes input in various format. I am attaching a link here.
http://manual.cytoscape.org/en/stable/Supported_Network_File_Formats.html
You have to give an edgelist where you have to define source nodes, target nodes and interaction type. A network would be given by cityscape which you can analyse using 'network analyser'.
What is source node and target node? Can i use string interactions file as well?
click “Apps” and search for "stringApp" and install it. follow the instructs in their home page.
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