this conversion is needed for Mesmer3.0 (kinetics)
I consider the best way were develop your own script with any tools like python, perl or awk for example. Another way is by hand using JUMBO or Chem4Word (http://research.microsoft.com/chem4word) to convert the Gaussian 09 output to CML format.
many thanks to Reinaldo Molina-Ruiz and
Aristotelis Zaras
the problem is over both Babel and Obabel work for me
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