I need to set up a model of clostridium difficile infection in mice. I need to monitor in the feces: clostridium CFU, DNA for quantitative PCR, and toxins.
How can I collect feces from mice if they are soffering of diarrhea?
This Jove protocol (Check the link) should be helpful to a great extent.
We have been collecting separate stool samples (good luck with getting some samples at the peak diarrheal phase) for CFU assay, qPCR assays and toxin ELISA in pre-weighed tubes.
Pre-weighing tubes will make it easier to normalize final readouts against stool content weight.