I have lipidomics data generated through LC-MS/MS from milk samples. How to start the analysis of LC-MS/MS lipidomics data, and what suitable software or web-based tools are available?
You can try MS-Dial for peak picking, identification of LC MS/MS data. https://www.lipidmaps.org/resources/tools/16?task=4.3
Hi Abhishek,
You can try LipidSearch, ThermofisherScientific software which supports data acquired by a Thermo mass spectrometer.
https://www.thermofisher.com/us/en/home/industrial/mass-spectrometry/liquid-chromatography-mass-spectrometry-lc-ms/lc-ms-software/multi-omics-data-analysis/lipid-search-software.html
At the above link, there is access to a free trial.
A second resource is one by ProteomeSotware called Elements.
https://www.proteomesoftware.com/products/scaffold-elements
you can request for a free trial.
Good luck,
Hediye.
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