Try using an excess (100x)! Hope your experiment works! Good luck!!
P.S.- check out if this procedure in this paper, it might help since TCEP is used in a labeling buffer (Article Multiple conformational states of DnaA protein regulate its ...
I was trying to label my virus which has 180 cysteine sites available. Prior to labelling, the virus is present in buffer ( tried both pH6 and 7). I treated them with 10x tcep for 1 hr( degassed and inert buffers) and then labelled them with Oregon green 488 maleimide dye(5-20x excess dye). I tried few times , but I am getting very poor labelling. Is it because the tcep concentration was low?
According to my standardized protocol I have used 20X TCEP and incubate for 20 minutes and I did get a very good labeling ratio. But because my protein has only one cysteine. So maybe TCEP concentration of yours is very low. Beside TCEP I want to know your incubation procedure after labeling?