for Mud rock and its pore water study under different conditions kindly follow Classical Book of Garrels and Thomsons or Garrels and Crist.. Chemical kinetics and Activity study are well described and may be useful for equilibrium study.
How about some more recent references that will help you think about caveats?
Hendry, M. J., S. L. Barbour, J. Zettl, V. Chostner, and L. I. Wassenaar. “Controls on the Long-Term Downward Transport of δ2H of Water in a Regionally Extensive, Two-Layered Aquitard System.” Water Resources Research 47, no. 6 (2011): n/a–n/a. doi:10.1029/2010WR010044.
Harrington, Glenn A., W. Payton Gardner, Brian D. Smerdon, and M. Jim Hendry. “Palaeohydrogeological Insights from Natural Tracer Profiles in Aquitard Porewater, Great Artesian Basin, Australia.” Water Resources Research 49, no. 7 (2013): 4054–4070. doi:10.1002/wrcr.20327.