How I can used AmberTools 20 (all steps) to make Molecular Dynamics Simulations for protein-ligand interaction?
Hi Dr gouzi
Here is a usfulle link
https://ambermd.org/tutorials/advanced/tutorial9/index.html
Hicham Gouzi , You can have a look on this
https://ambermd.org/tutorials/advanced/tutorial9/setup_old.html
http://ambermd.org/tutorials/advanced/tutorial9/
https://mmb.irbbarcelona.org/biobb/availability/tutorials/protein-complex_md_setup
and also the similar question asked here
https://www.researchgate.net/post/MD_simulation_of_protein-ligand_complex_using_the_Amber_program_available_at_The_Bioinformatics_Resources_Applications_Facility_BRAF_at_C-DAC
There are various tutorials provided at the Amber website. Try your hands out with the one which suits your work. They are pretty good and user friendly.
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