How I can used AmberTools 20 (all steps) to make Molecular Dynamics Simulations for protein-ligand interaction?
Hi Dr gouzi
Here is a usfulle link
https://ambermd.org/tutorials/advanced/tutorial9/index.html
Hicham Gouzi , You can have a look on this
https://ambermd.org/tutorials/advanced/tutorial9/setup_old.html
http://ambermd.org/tutorials/advanced/tutorial9/
https://mmb.irbbarcelona.org/biobb/availability/tutorials/protein-complex_md_setup
and also the similar question asked here
https://www.researchgate.net/post/MD_simulation_of_protein-ligand_complex_using_the_Amber_program_available_at_The_Bioinformatics_Resources_Applications_Facility_BRAF_at_C-DAC
There are various tutorials provided at the Amber website. Try your hands out with the one which suits your work. They are pretty good and user friendly.
most of my articles and research are in Arabic. They range from 600 words to 6000 words. I also have books in Arabic and Spanish that could be added. Thank you so much
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