How do you measure the angle between two domains of a protein structure?

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Pankaj Kumar

Thanks Marco Pedretti I will try. Do we have an alternative?

George Minasov

Pankaj, hi again,

I would recommend to split your protein in two domains and use two TLS groups to refine your structure. Then analyze the relative Translation, Libration and Screw motion between your domains. This will be more complete information about relative movement between domains.

Article TLS from fundamentals to practice

http://skuld.bmsc.washington.edu/~tlsmd/

Good luck!

Best,

George.

Thank you George Minasov