I m using BRATS 15 data ,for my final year project.I want to apply CNN with python ,using Pytorch.I m new with .mha file and MRI tumor dataset .Kindly someone explain the procedure in short detail ( from basic to advance) of how can I accomplish this task..
I would really appreciate any help from you.Thanks.
There are a few ways to approach this. Doing a simple Google search this is what I found:
1.) Use this code: https://github.com/pzaffino/python-mha/blob/master/mha.py
2.) Use MedPy: https://pypi.org/project/MedPy/
3.) Use MATLAB: https://www.mathworks.com/matlabcentral/answers/87755-how-to-read-display-and-process-mha-files-in-matlab
Good luck!
Travis
you will need libraries like nibabel, Simple ITK, nilearn for processing
but just for viewing and looking at 3D you can use ITK-SNAP and Slicer3D
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