I am cultivating K.pneumoniae biofilms in a microfluidic flow cell system, in three-channel flow cells for 24 and 48 hours under constant flow using a peristaltic pump. However, the organism is growing back throughout the entire system i.e. the bubble traps, marpene tubing and media reservoir. Is there any way to prevent undesired growth throughout the system?

Upon inoculation, I inject into each flow channel and invert the flow cell for approximately 1h to faciliate adherence to a substratum (Glass slide). Any help would be appreciated.

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