How do I see STRING-db interaction/edge sources?

02 August 2019 1 4K Report

Hi all,

can anyone please tell me if there is a way to see why STRING suggested a particular edge between two of my proteins? When I click the edge, it say, for example, co-expression score 0,7 or being co-mentioned in abstracts score 0,5, but even when I click show all it doesn't show me in WHICH abstracts that is, or where they got the co-expression data from.

Thanks!!

Bruno César Feltes

Hi Adam,

Actually, it does tell you in which abstract it extracted the information. After you click the edge, you will find "Co-Mentioned in PubMed Abstracts:" in the end of the interaction options, in the new window. Next to the score you have a "Show" button. If you click it, you will be redirected to a list of abstracts. The same thing will happen for the other types of data. It is all there.

Cheers,

Badges
Science topic

Similar topics
Education
Students

More Adam Klocperk's questions See All

Good sites to recruit survey participants on a grad school student budget?

Any good recommendations for participant recruitment for online surveys on a grad school student budget?

02 March 2021 4,293 4 View

What is the stability of 2 3-dihydroxyquinoxaline in acidic water?

I'm developing a UHPLC assay, and the fluorescent product is 2,3-dihydroxyquinoxaline. The reaction to produce this requires hydrochloric acid (about 1.2 M). Will storage in this acidic...

20 February 2021 5,820 4 View

What is the best way to improve the working potential window of a solid electrolyte?

My solid polymer electrolyte shows low bulk resistance show quite a low bulk resistance. However, the potential window (obtained from LVS) is very small. Please how can I improve the operating...

31 January 2021 3,340 9 View

What is the best procedure for measuring the pH of aqueous colloidal systems?

There has long been a debate among my colleagues about measuring the pH of aqueous colloids. As I see there is no general truth in the matter, so I ask this question below. What is the best and...

31 January 2021 8,203 3 View

Is carboxymethyl cellulose a better electrolyte host polymer than methyl cellulose and cellulose acetate?

I want to prepare a cellulose-based biopolymer solid electrolyte by solution casting technique. However, choosing the right cellulose derivative has been my major challenge. Among the many factors...

30 January 2021 5,355 3 View

How can I implement a Generalized Estimating Equation method on spatially autocorrelated time-series data?

I used Generalized Estimating Equations (geepack in R) on my regularly monitored (twice a year) plant abundance data in grid cells to evaluate their trends of density. Since these are time-series...

26 January 2021 3,833 1 View

How to extract isodose lines from radiotherapy dose cloud into masks that can be overlaid on images using python?

I'm able to load a dose cloud into python as a numpy ndarray using pynrrd. The next challenge is to extract isodose lines (like V50%) to create masks (bitmap images) that I can overlay onto other...

19 January 2021 8,503 2 View

How to calculate percent of identity in aligned RNA sequences with a sliding window ?

Hello, I aligned some RNA sequences to identify if some part are similar. I would like to represent my result with the similarity in y-axis and the alignement in x-axis. I want to calculate this...

13 January 2021 7,833 3 View

Which peak should I consider when calculating ZIF-8's crystalline size from XRD?

Hello, Using the Scherrer's equation, one could calculate, roughly, the crystalline size of ZIF-8. However, I am confused as to which peak in the XRD pattern should be taken for the calculation?...

10 January 2021 8,633 3 View

Bio Rad CFX96 Touch Real time PCR System?

Dear friends I would like to ask about your experience with the instrument (Bio Rad CFX96 Touch Real time PCR System) and its performance. Also I would like to know if this version need...

29 November 2020 2,166 5 View

How to compare two groups with only two measurements?

Hiiiii everyone! I have an enquiry on statistical analysis. I was looking for many forum and it's still cannot solve my problem. I want to compare means of two groups of data but only with two...

03 March 2021 8,796 3 View

Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence?

I am on the lookout for the Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence. Does anyone know where I can find it? Thank you in advance

03 March 2021 3,568 1 View

What kind of fluid could I use for a pitfall trap that also does not invalidate molecular testing?

Hi, I want to start testing pitfall trap to obtain ants samples, but I need to conduct molecular analysis on those insects. So, what kind of fluid can I use? Ethanol expires too early and I need...

03 March 2021 5,978 5 View

What's the best way to measure growth rates in House sparrow chicks from day 2 to day 10?

What's the best way to measure growth rates in House sparrow chicks from day 2 to day 10? Since, the growth curve from day 2 to 10 won't be like the "Logistic curve" it might not follow logistic...

03 March 2021 1,401 3 View

Do we need to write protocol for a second study of a systematic review that has been registered and published?

I have conducted and published a systematic review and meta-analysis research with the topic related to public health and health pomotion (protocol was registed in PROSPERO). Now we want to...

03 March 2021 8,920 3 View

How to increase a model accuracy ?

dear community, my model is based feature extraction from non stationary signals using discrete Wavelet Transform and then using statistical features then machine learning classifiers in order to...

03 March 2021 6,994 5 View

Do I need to do linear regression before running mediation analysis using PROCESS MACRO by Hayes ?

I just wanted to check if I need to run a linear regression separately if I am using PROCESS MACRO to run mediation analysis. Thank you.

02 March 2021 4,359 3 View

Gel electrophoresis result for total RNA samples, 1.5 Agarose gel was used, How to improve the integrity of RNA?

Gel electrophoresis, RNA degradation, RNA extraction from fresh tissue

02 March 2021 5,433 5 View

Sample dilution for quantitative analysis using ELISA?

If the detection range is in ng/ml but the reference range is in ug/ml for a molecule or protein in serum or plasma .how to dilute and what is the initial volume to be taken for quantitative analysis

02 March 2021 7,670 3 View

Is There Any Feasible Method To Test Fluorescent Compounds Other Than Fluorescence Spectrometers ??

Is There Any Feasible Method To Test The Efficiency Of Fluorescent Compounds Other Than UV Spectrometers ? Suggestions Would Be Appreciated !

02 March 2021 5,785 3 View