How do I register an MRI image from paper to an anatomical template?

26 April 2020 0 4K Report

I'm in the situation where I'm trying to extract coordinates of activations for an MRI image from a paper. I'm able to convert the image into a NIFTI file following these steps: https://layerfmri.com/2018/07/19/how-to-convert-any-paper-figure-into-a-layer-profile/, but am having difficulty aligning the 2D image to an MNI template. I've tried FLIRT, but I am having no luck with that - does anyone have any suggestions?

Thanks in advance,

John

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