I have two different fits files with different shapes (i.e. (310, 256, 256) & (560, 4, 786432)). How do i make two scatter plots to compare them using python? That's plotting one data on the other.
Can you better explain what kind of plot you want to obtain?
Agreed, I don't understand the 3-d data, but if you want to plot simple scatter plots, use matplotlib scatter.
http://matplotlib.org/examples/shapes_and_collections/scatter_demo.html
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